ポスター

P1. Toshiyuki Tsuji, Takao Yoda and Tsuyoshi Shirai. Analyzing disease-related amino acid variants with protein supramolecule modeling
P2. Motomu Matsui and Wataru Iwasaki. Graph Splitting Method: Novel Phylogenetic Approach Beyond the Twilight Zone
P3. Kentaro Inoue, Hisaaki Shinohara and Mariko Okada. Dynamic model and experimental validation for oscillation and switch-like response of NF-κB activity
P4. Ryusuke Sawada, Michio Iwata and Yoshihiro Yamanishi. Drug target prediction from the integration of chemically and genetically perturbed gene expression profiles
P5. Yuhya Takahashi, Asuka Sugimoto, Jiyoung Kang and Masaru Tateno. Novel algorithm for identification of gene clusters in whole genome DNA sequences
P6. Yosuke Nishimura, Hiroyasu Watai, Takashi Honda, Kimiho Omae, Tomoko Mihara, Pascal Hingamp, Keigo Yamamoto, Yoshihiko Sako, Takashi Yoshida, Susumu Goto and Hiroyuki Ogata. Revealing complete genomes from metagenomes: a case study for viruses in the ocean
P7. Asuka Sugimoto, Jiyoung Kang, Yuhya Takahashi, Mary Miyaji, Ryohei Furuta, Kuniaki Sano, Kimiko M. Tsutsui, Ken Tsutsui and Masaru Tateno. Novel strategy for genome-wide identification of widely-diverse transcriptional regulation motifs
P8. Yugo Shimizu, Hiroyuki Ogata and Susumu Goto. Relating the reaction types and phylogeny of type III polyketide synthases
P9. Kunie Sakurai and Wataru Fujibuchi. Minimum Information Guideline for Regenerative Medicine and Genome Privacy
P10. Kana Shimizu, Koji Nuida and Gunnar Raetsch. Efficient Privacy-Preserving Genomic Sequence Search
P11. Jun-Ichi Satoh, Yoshihiro Kino and Shumpei Niida. MicroRNA-Seq Data Analysis Pipeline to Identify Blood Biomarkers for Alzheimer’s Disease from Public Data
P12. Hayliang Ngouv, Morihiro Hayashida, Jose Nacher and Tatsuya Akutsu. Prediction of ncRNA-disease Association Based on Sequence Expression and Tripartite Network
P13. Daichi Shigemizu, Yukihide Momozawa, Takashi Morizono, Keith Boroevich, Sadaaki Takata, Kyota Ashikawa, Michiaki Kubo and Tatsuhiko Tsunoda. Performance comparison of four commercial human whole-exome capture platforms
P14. Kazuma Kanehara, Manabu Itakura, Hirohito Tsurumaru, Yuko Hoshino, Yong Wang, Hiroko Akiyama, Masahito Hayatsu and Kiwamu Minamisawa. Metagenome-mapping method discriminates native and inoculant populations of soybean bradyrhizobia
P15. Jianqiang Sun, Min Tang, Kentaro Shimizu and Koji Kadota. DEGES-based method for estimating the gene dispersions of RNA-seq count data without replicate
P16. Takeshi Fujiwara and Tetsuo Noda. Prediction Somatic mutations from rare SNPs.
P17. Naoto Imamachi, Yutaka Suzuki and Nobuyoshi Akimitsu. Characterization of context features in 3’UTR region of UPF1 target transcripts
P18. Takaaki Ichikawa, Hideaki Umeyama and Mitsuo Iwadate. Large scale knowledgebase in silico screening & Hydrophobic interactions
P19. Kengo Sato, Shunya Kashiwagi and Yasubumi Sakakibara. A max-margin model for predicting residue-base contacts in protein-RNA interactions
P20. Tsukasa Fukunaga and Wataru Iwasaki. Behavioral pattern detection algorithm for C.elegans towards understanding relationships among genes, neurons, and behavior
P21. Yusuke Azuma and Shuichi Onami. Quantitative analysis for variability of cellular dynamics in C. elegans embryogenesis
P22. Masaki Murase, Satoshi Tanaka, Akiyasu C. Yoshizawa and Susumu Goto. Open-sourced Mass++ for Mass Spectrometric Data Analysis
P23. Takeshi Kawabata, Hirofumi Suzuki and Haruki Nakamura. Omokage search and gmfit : global shape similarity search and 3D-superposition among atomic models and density maps
P24. Masahiro Kanai, Toshihiro Tanaka and Yukinori Okada. Empirical estimation of a genome-wide significance threshold based on the 1000 Genomes Project dataset
P25. Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Yuki Moriya, Shin Kawano, Susumu Goto and Yasushi Ishihama. Search space reduction by utilizing known modification information for proteomic database search
P26. Xueting Qiang and Wataru Iwasaki. Mining Method Section of Full-Text Articles toward Better Selection of Bioinformatic Methods
P27. Kota Kasahara, Junichi Higo, Bhaskar Dasgupta and Haruki Nakamura. Estimating the Probability Distribution of a High-dimensional Protein Conformational Space
P28. Emiko Ushiyama and Wataru Iwasaki. Trend analysis of bioinformatic researches in each country
P29. Daisuke Tominaga, Kazuki Mori and Sachiyo Aburatani. Prediction of gene combinations for optimal transgenics
P30. Itaru Takeda, Masayuki Machida and Sachiyo Aburatani. Exploration of Novel Activated Pathways Using Reconstructed Comprehensive Pathway Model for Microorganisms
P31. Hirotaka Matsumoto and Hisanori Kiryu. Modeling gene expression dynamics along differentiation with single-cell data and stochastic process
P32. Aika Terada, Koji Tsuda and Jun Sese. LAMPLINK: An additional function for PLINK to detect statistically significant genetic interactions
P33. Yusuke Okazaki and Shohei Fujinaga. Encyclopedia of uncultured microbes – visualize ecological niche of uncultured clade using 16S rRNA gene sequence database
P34. Masaaki Shiota, Michiko Ehara and Kiyoko Kinoshita. Analysis of lectin array data using glycoinformatics
P35. Takuro Anamizu, Yasubumi Sakakibara and Kengo Sato. A novel algorithm for multiple sequence alignments via dual decomposition
P36. Nobuyuki Hashimoto and Kiyoko Kinoshita. Development of Generating Tool for SBML Model of Pathway Related to Glycans
P37. Yuki Kato, Jakob Hull Havgaard and Jan Gorodkin. Genomic screen for structured RNAs using coarse-grained dot plots
P38. Atsushi Hijikata, Masafumi Shionyu and Tsuyoshi Shirai. Development of a protein-protein docking method based on matching of vector-presented amino acid residues
P39. Y-H. Taguchi. Principal component analysis based unsupervised feature extraction applied to budding yeast temporally periodic gene expression
P40. Keiko Tokunaga and Kiyoko Aoki-Kinoshita. Development of a visualization tool for browsing glycan structure relationships in RDF
P41. Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura and Kentaro Shimizu. Comparison of the binding sites prediction methods from amino acid sequences and 3D structures
P42. Satoshi Hiraoka and Wataru Iwasaki. Novel metagenomic data analysis method based on genetic divergences and gene-order networks
P43. Yuki Moriya, Shin Kawano, Shujiro Okuda, Tadashi Yamamoto, Masaki Matsumoto, Daiki Kobayashi, Norie Araki, Akiyasu C. Yoshizawa, Susumu Goto, Tsuyoshi Tabata, Naoyuki Sugiyama and Yasush Ishihama. jPOST: Development of a high-quality proteome database
P44. Yuichi Aoki, Takeshi Obayashi and Kengo Kinoshita. Relationship Analysis between 3D Genome Architecture and Gene Coexpression
P45. Masayuki Ishitsuka, Tatsuya Akutsu and Jose Nacher. On the efficient identification of proteins with control roles in large networks
P46. Tomoko Mihara, Hitoshi Koyano, Pascal Hingamp, Susumu Goto and Hiroyuki Ogata. Assessing the diversity of the Megaviridae giant viruses based on RNA polymerase β genes
P47. Akihiko Okamoto, Shinya Asano, Masahiro Inoue and Jun Sese. Genome wide association study using direct-to-consumer genetic (DTC) tests in Japan
P48. Min Tang, Jianqiang Sun, Kentaro Shimizu and Koji Kadota. Benchmarking methods for simulation and analysis of RNA sequencing data
P49. Toshihito Michizoe and Hiroto Saigo. An extended linear mixture model approach to modelling population structure
P50. Kenji Matsumoto and Hiroto Saigo. A branch-and-bound algorithm for searching the block with interacting SNPs
P51. Kenta Kobayashi, Midori Yuji, Yuki Kato, Takeaki Taniguchi, Toru Maruyama, Michihiro Ito, Susumu Goto, Haruko Takeyama and Wataru Fujibuchi. Development of a pipeline for analysis of meta- and single-cell genomic sequences
P52. Jiyoung Kang, Takuya Takeda and Masaru Tateno. Development of protein-protein docking algorithm based on identification of hydrogen-bond networks
P53. Shinya Asano, Akihiko Okamoto, Masahiro Inoue and Jun Sese. Data Collection and Quality Assessment by Using Direct to Consumer (DTC) Genetic Testing Service
P54. Takuro Yamaguchi and Hiroto Saigo. Efficient enumeration of statistically significant SNP interactions
P55. Akihiro Nakaya, Masataka Kikuchi, Akinori Miyashita, Norikazu Hara, Kensaku Kasuga, Nao Nishida, Katsushi Tokunaga, Ryozo Kuwano and Takeshi Ikeuchi. AD/GD CNVdb (Alzheimer’s Disease Genomic Databases, Copy Number Variation Database)
P56. Naoki Osato. A novel approach to predict transcriptional target genes based on their functional enrichments
P57. Takamasa Okanishi, Yuki Kato, Hiroyuki Fujimura, Yoshikatsu Nakano, Shoichiro Suda, Hideko Sone and Wataru Fujibuchi. Network analysis of marine environmental factors based on MCMC sampling
P58. Keisuke Yanagisawa, Shunta Komine, Masahito Ohue, Takashi Ishida and Yutaka Akiyama. Fast pre-filtering for virtual screening based on compound decomposition
P59. Yuki Ushioda and Kiyoko Aoki-Kinoshita. Introduction of Semantic Web into FlyGlycoDB, The Glycan Related Gene Database of Drosophila.
P60. Ryo Nakaki, Shuichi Tsutsumi and Hiroyuki Aburatani. Hetero-DGF: a novel algorithm to decompose heterogeneous binding footprints of transcription factors
P61. Kazuki Mori, Daisuke Tominaga and Sachiyo Aburatani. Activated substructure inference in a large gene regulatory network
P62. Masashi Yokochi, Takeshi Iwata, Naohiro Kobayashi, Chijiro Kojima and Toshimichi Fujiwara. PDBj-BMRB: a web search service for biological NMR data and beyond
P63. Mayumi Kamada, Masahiko Nakatsui, Mitsugu Araki and Yasushi Okuno. Prediction of cancer drug efficiency by combining clinical genetics and molecular dynamics
P64. Kosuke Hori and Tetsushi Yada. Inference of genetic mutations causing host shifts of rabies virus
P65. Kenta Sato and Kentaro Shimizu. Efficient short read sequence mapping in the Julia language.
P66. Yuko Koyanagi and Hiroto Saigo. Estimating the number of interacting SNPs for case control study
P67. Teppei Ogawa, Hiroki Makiguchi, Masahiko Nakatsui, Robert Cox III, Akihiko Kondo and Michihiro Araki. M-path Database: Navigating Potential Metabolic Pathways
P68. Kaname Kojima, Yosuke Kawai, Naoki Nariai, Takahiro Mimori, Takanori Hasegawa and Masao Nagasaki. CoalescentSTR: a statistical method estimating short tandem repeat numbers from high-throughput sequencing data for multiple individuals by considering their unobserved genealogy
P69. Tetsushi Yada and Takeaki Taniguchi. Observing de novo gene birth through reconstruction of ancestral DNA sequences
P70. Yoshihiko Hasegawa. Optimal Dynamical Pattern for Efficient Cellular Communication
P71. Yasunobu Okamura and Kengo Kinoshita. An ultra fast gene expression quantification tool using unique N-gram
P72. Yoshimasa Aoto, Tsuyoshi Hachiya, Kazuhiro Okumura, Sumitaka Hase, Kengo Sato, Yuichi Wakabayashi and Yasubumi Sakakibara. Development of high-accuracy clustering algorithm based on statistical test results
P73. Yuya Hirayama and Hiroto Saigo. Drug side effects prediction by multiple graph PLS
P74. Ikuko Motoike, Tomo Saito, Seizo Koshiba, Daisuke Saigusa, Yasutake Katoh, Matsuyuki Shirota, Jun Yasuda, Kengo Kinoshita and Masayuki Yamamoto. jMorp : Japanese Multi Omics Reference Panel
P75. Gert-Jan Bekker, Akira R Kinjo and Haruki Nakamura. Molmil: an efficient, high quality molecular viewer for the web
P76. Kunihiro Nishimura, Toshiki Takeuchi, Atsuo Yamada and Takashi Aoki. Open-source clojure library for sequence alignment data : cljam
P77. Tsukasa Nakamura and Kentaro Tomii. Protein ligand-binding site comparison by a reduced vector representation derived from multidimensional scaling of generalized description of binding sites
P78. Katsuhiko Murakami. Identification of latent factors in gene databases using non-negative matrix factorization
P79. Haruka Ozaki and Itoshi Nikaido. Prediction of functional enhancers by statistical modeling of gene expression and epigenomic data
P80. Takeshi Kawashima. The necessity of tools for exploring associations between phylogenetic and geologic data in modern phylogenomics
P81. Tomohiro Ban, Masahito Ohue and Yutaka Akiyama. Multiple Grids Arrangement for Ligand Docking and Its Application to Inverse Docking Problem
P82. Dai Watabe and Toshinori Endo. Analysis of bottle gourd propagation route from African Continent to American Continent
P83. Toshinori Endo and Motoki Miyazawa. Ligand prediction for Bombesin receptor subtype-3 using genome scanning
P84. Naoto Miura and Toshinori Endo. Identification of HLA allele types involved in chronic Hepatitis C Virus
P85. Yutaka Yoshida and Toshinori Endo. Predicting the ligand of GPR161, overexpressed in triple-negative breast cancer cell, using Self-Organizing-Map
P86. Tatsuma Sakamoto and Toshinori Endo. Cancer suppressing mechanism by Sirt1 regulating apoptosis through binding to Ca2+ in mitochondria
P87. Zheng Liu, Naoki Osada and Toshinori Endo. Genetic differences on depression behavior between human and rhesus monkey based on gene ontology
P88. Shuichi Kawashima, Toshiaki Katayama and Ysunori Yamamoto. NBDC RDF portal and the RDFizing database guideline
P89. Gul Saad, Kokoro Ueki and Kentaro Shimizu. Development of a system for automatic generation of protein-ligand binding sites prediction tools
P90. Michio Iwata, Ryusuke Sawada, Hiroaki Iwata and Yoshihiro Yamanishi. Inferring the mode-of-action of bioactive compounds using large-scale transcriptome data in LINCS toward drug repositioning
P91. Koki Tsuyuzaki, Gota Morota, Manabu Ishii, Takeru Nakazato, Satoru Miyazaki and Itoshi Nikaido. MeSH ORA : R/Bioconductor packages for performing MeSH over-representation analysis in model and non-model organism